Publications and contributions since September 2007
* Co-authorship was offered by the authors
Peer-reviewed manuscripts | ||
| 2010 | The MAQC-II Project: A comprehensive study of common practices for the development and validation of microarray-based predictive models | Nature Biotechnology Impact factor: 29.495 Shi L, Campbell G, Jones WD,..., Scherer A,...,Wolfinger R |
| 2010 | A Comparison of Batch Effect Removal Methods for Enhancement of Cross-Batch Prediction Performance Using MAQC-II Microarray Gene Expression Data | The Pharmacogenomics Journal, in press Impact factor: 5.435 J. Luo, M. Schumacher, A. Scherer, D. Sanoudou, D. Megherbi, T. Davison, T. Shi, W. Tong, L. Shi, H. Hong, C. Zhao, F. Elloumi, W. Shi, R. Thomas, S. Lin, G. Tillinghast, G. Liu, Y. Zhou, D. herman, Y. Li, Y. deng, H. Fang, M. Woods, P. Bushel, M. Woods, J. Zhang |
| 2009 | Meta-Analyses Qualify Metzincins and Related Genes as Acute Rejection Markers in Renal Transplant Patients | American Journal of Transplantation 2009;10:296-297. Impact factor: 6.4 S. Roedder, A. Scherer*, M. Koerner, U. Eisenberger, A. Hertig, F. Raulf, E. Rondeau, H-P. Marti |
| 2009 | Functional Genomic Analysis of Peripheral Blood During Early Acute Renal Allograft Rejection. | Transplantation, 2009;88:942-951. Impact factor: 3.461 (2007) Oliver P. Günther, Robert F. Balshaw, Andreas Scherer*, Zsuzsanna Hollander, Alice Mui, Tim Triche, Gabriela Cohen Freue, Guiyun Li, Raymond Ng, Janet Wilson-McManus, W. Robert McMaster, Bruce M. McManus, Paul A. Keown |
| 2009 | Transcriptome Changes in Renal Allograft Protocol Biopsies at Three Months Precede the Onset of Interstitial Fibrosis/Tubular Atrophy (IF/TA) at Six Months | Nephrology Dialysis Transplantation (NDT), 2009:24:2567-2575. Impact factor 3.2 A. Scherer, W. Gwinner, M. Mengel, T. Kirsch, F. Raulf, N. Hartmann, F. Staedtler, G. Engel, J. Klupp, A. Korn, J. Kehren, H. Haller |
| 2009 | Renal Allografts with IF/TA Display Distinct Expression Profiles of Metzincins and Related Genes | American Journal of Transplantation (AJT), 2009, Vol.9 (3): 517-526 Impact factor 6.4 S. Rödder, A. Scherer*, F. Raulf, C.C. Berthier, A. Hertig, E. Rondeau, H.-P. Marti |
| 2007 | MDQC: a new quality assessment method for microarrays based on quality control reports. | Bioinformatics. 2007 Dec 1;23(23):3162-9 Impact factor: 5.04 Cohen Freue GV, Hollander Z, Shen E, Zamar RH, Balshaw R, Scherer A*, McManus B, Keown P, McMaster WR, Ng RT |
Book chapters/Books | ||
| 2010 | Clinical Validation and Biomarkers Translation In ”Biomarkers in Drug Development: A Handbook of Practice, Application, and Strategy”, editors: MR Bleavins, C Carini, M Jurima-Romet, and R Rahbari | David Lin, Andreas Scherer*, Raymond Ng, Robert Balshaw, Shawna Flynn, Paul Keown begin_of_the_skype_highlighting end_of_the_skype_highlighting, Rob McMaster, Bruce McManus John Wiley & Sons, Inc. 2010, ISBN 978-0-470-16927-8 |
| 2009 | Batch Effects and Noise in Microarray Experiments: Sources and Solutions | Andreas Scherer, editor John Wiley & Sons, Inc. 2009, ISBN 978-0-470-74138-2 |
| 2009 | Variation, Variability, Batches and Bias in Microarray Experiments: An Introduction In: "Batch Effects and Noise in Microarray Experiments: Sources and Solutions", editor: Andreas Scherer | Andreas Scherer John Wiley & Sons, Inc. 2009, ISBN 978-0-470-74138-2 |
| 2009 | Aspects of Technical Bias In: "Batch Effects and Noise in Microarray Experiments: Sources and Solutions", editor: Andreas Scherer | Martin Schumacher begin_of_the_skype_highlighting end_of_the_skype_highlighting, Frank Staedtler begin_of_the_skype_highlighting end_of_the_skype_highlighting, Wendell Jones, and Andreas Scherer John Wiley & Sons, Inc. 2009, ISBN 978-0-470-74138-2 |
| 2009 | Toward Integration of Biological Noise: Aggregation Effect in Microarray Data Analysis In: "Batch Effects and Noise in Microarray Experiments: Sources and Solutions", editor: Andreas Scherer | Lev Klebanov and Andreas Scherer John Wiley & Sons, Inc. 2009, ISBN 978-0-470-74138-2 |
| 2009 | Data, Analysis, and Standardization In: "Batch Effects and Noise in Microarray Experiments: Sources and Solutions", editor: Andreas Scherer | Gabriella Rustici, Andreas Scherer, and John Quackenbush John Wiley & Sons, Inc. 2009, ISBN 978-0-470-74138-2 |
Oral Presentations, Posters and Abstracts | ||
| 2010 | Gene expression profiles are differently affected by pimecrolimus and beta-methasone in leasional skin in atopic dermatitis | Poster 40th Annual Meeting of the European Society for Dermatological Research (ESRD); 8.-11. Sept. 2010, Helsinki, Finland A. Scherer*, J.-M. Jensen, M. Braeutigam,..., and E. Proksch |
| 2010 | Successful cross-organ classification of fibrosis based on microarray meta-analysis applying a classifier model of renal transplant IF/TA | Oral presentation; XXIII International Congress of The Transplantation Society, 2010, Vancouver, Canada S. Roedder, A. Scherer*, M. Koerner, and H.-P. Marti |
| 2010 | Classification of acute renal rejecion with proteogenomic ensemble classifiers | Oral presentation; XXIII International Congress of The Transplantation Society, 2010, Vancouver, Canada O.P. Guenther, A. Scherer*, D. Lin,..., and P.A. Keown |
| 2010 | Expression Signatures of Extracellular Matrix Related Transcript Sets Linked Renal Allograft Interstitial Fibrosis/Tubular Atrophy with Acute T-cell mediated Rejection | Oral presentation; 1st International Conference on Transplantomics and Biomarkers in Organ Transplantation; San Francisco, Feb 24-26, 2010. S. Roedder, A. Scherer*, and H.-P. Marti |
| 2008 | Longitudinal Pattern of Differential Gene Expression Within the First 3 Months Following Renal Transplantation | XXII International Congress of The Transplantation Society in Sydney, August 2008; poster Paul Keown begin_of_the_skype_highlighting end_of_the_skype_highlighting, Andreas Scherer*, Oliver Gùˆnther, Zsuzsanna Hollander, Gabriela Cohen-Freue, David Lin, Janet Wilson-McManus, Robert Balshaw, Raymond Ng, Robert McMaster and Bruce McManus |
| 2008 | Differential Expression of Metzincins and Related Genes, including MMP7, -9 and THBS2, discriminates Acute Rejection from Chronic Dysfunction in Renal Allografts | American Society of Nephrology (ASN) Renal Week 2008, November 4 - November 9, 2008; poster Silke Roedder, Andreas Scherer*, Friedrich Raulf, Celine Berthier, Alexandre Hertig, Eric Rondeau,and Hans Peter Marti |
| 2008 | Renal Allografts with Non- Specified Chronic Dysfunction are Characterized by Distinct Expression Profiles of Metzincins and Related Genes | International Society of Nephrology (ISN); Nexus Symposium on Transplantation and the Kidney; Rome, Italy, Sept 25-28, 2008; poster S Roedder, A Scherer*, F Raulf, C Berthier, A Hertig, E Rondeau, HP Marti |
| 2008 | Biomarkers in Renal Transplantation: The Vancouver Biomarkers Program | Canadian Society of Transplantation Annual Scientific Meeting (CST), March 2008, Quebec, CA |
| 2007 | Translational Program for Applied Health- Biomarkers in Transplantation-A Canada-Wide Trial and Biomarker Assay Development | Genome British Columbia Biomarker in Transplantation; Grant proposal |
| 2007 | Gene Expression Profiling Reveals Dysregulation of Matrix Metalloproteinases and Extracellular Matrix-Related Genes in Chronic Allograft Nephropathy | American Society of Nephrology (ASN), Nov 2007, San Francisco, USA Dr. Silke Roedder/Prof. Hans-Peter Marti, Inselspital Bern, CH |
| 2007 | Founding of Spheromics in September 2007 | |